uncollatedFileOperation.C

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/*---------------------------------------------------------------------------*\
  =========                 |
  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
   \\    /   O peration     |
    \\  /    A nd           | www.openfoam.com
     \\/     M anipulation  |
-------------------------------------------------------------------------------
    Copyright (C) 2017 OpenFOAM Foundation
    Copyright (C) 2020-2023 OpenCFD Ltd.
-------------------------------------------------------------------------------
License
    This file is part of OpenFOAM.

    OpenFOAM is free software: you can redistribute it and/or modify it
    under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.

    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
    for more details.

    You should have received a copy of the GNU General Public License
    along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.

\*---------------------------------------------------------------------------*/

#include "uncollatedFileOperation.H"
#include "fileOperationInitialise.H"
#include "Time.H"
#include "Fstream.H"
#include "addToRunTimeSelectionTable.H"
#include "decomposedBlockData.H"
#include "dummyISstream.H"

/* * * * * * * * * * * * * * * Static Member Data  * * * * * * * * * * * * * */

namespace Foam
{
namespace fileOperations
{
    defineTypeNameAndDebug(uncollatedFileOperation, 0);
    addToRunTimeSelectionTable
    (
        fileOperation,
        uncollatedFileOperation,
        word
    );
    addToRunTimeSelectionTable
    (
        fileOperation,
        uncollatedFileOperation,
        comm
    );

    // Threaded MPI: not required
    addNamedToRunTimeSelectionTable
    (
        fileOperationInitialise,
        fileOperationInitialise_unthreaded,
        word,
        uncollated
    );
}
}


// * * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * //

Foam::fileName Foam::fileOperations::uncollatedFileOperation::filePathInfo
(
    const bool checkGlobal,
    const bool isFile,
    const IOobject& io,
    const bool search
) const
{
    if (io.instance().isAbsolute())
    {
        fileName objectPath(io.instance()/io.name());

        if (isFileOrDir(isFile, objectPath))
        {
            return objectPath;
        }
    }
    else
    {
        fileName path(io.path());
        fileName objectPath(path/io.name());

        if (isFileOrDir(isFile, objectPath))
        {
            return objectPath;
        }
        else
        {
            if
            (
                checkGlobal
             && io.time().processorCase()
             && (
                    io.instance() == io.time().system()
                 || io.instance() == io.time().constant()
                )
            )
            {
                // Constant & system can come from global case

                fileName parentObjectPath =
                    io.rootPath()/io.time().globalCaseName()
                   /io.instance()/io.db().dbDir()/io.local()/io.name();

                if (isFileOrDir(isFile, parentObjectPath))
                {
                    return parentObjectPath;
                }
            }

            // Check if parallel "procesors" directory
            if (io.time().processorCase())
            {
                const refPtr<dirIndexList> pDirs
                (
                    lookupProcessorsPath
                    (
                        io.objectPath()
                    )
                );

                for (const dirIndex& dirIdx : pDirs())
                {
                    const fileName& pDir = dirIdx.first();
                    fileName objPath =
                        processorsPath(io, io.instance(), pDir)
                       /io.name();
                    if (objPath != objectPath && isFileOrDir(isFile, objPath))
                    {
                        return objPath;
                    }
                }
            }


            // Check for approximately same time. E.g. if time = 1e-2 and
            // directory is 0.01 (due to different time formats)
            if (search && !Foam::isDir(path))
            {
                word newInstancePath = io.time().findInstancePath
                (
                    instant(io.instance())
                );

                if (newInstancePath.size())
                {
                    fileName fName
                    (
                        io.rootPath()/io.caseName()
                       /newInstancePath/io.db().dbDir()/io.local()/io.name()
                    );

                    if (isFileOrDir(isFile, fName))
                    {
                        return fName;
                    }
                }
            }
        }
    }

    return fileName();
}


Foam::refPtr<Foam::fileOperation::dirIndexList>
Foam::fileOperations::uncollatedFileOperation::lookupProcessorsPath
(
    const fileName& fName
) const
{
    // No additional parallel synchronisation
    return fileOperation::lookupAndCacheProcessorsPath(fName, false);
}


// * * * * * * * * * * * * * * * Local Functions * * * * * * * * * * * * * * //

namespace Foam
{

// Construction helper: self/world/local communicator and IO ranks
static Tuple2<label, labelList> getCommPattern()
{
    // Default is COMM_SELF (only involves itself)
    Tuple2<label, labelList> commAndIORanks
    (
        UPstream::commSelf(),
        fileOperation::getGlobalIORanks()
    );

    if (UPstream::parRun() && commAndIORanks.second().size() > 1)
    {
        // Multiple masters: ranks for my IO range
        commAndIORanks.first() = UPstream::allocateCommunicator
        (
            UPstream::worldComm,
            fileOperation::subRanks(commAndIORanks.second())
        );
    }

    return commAndIORanks;
}

} // End namespace Foam


// * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //

void Foam::fileOperations::uncollatedFileOperation::init(bool verbose)
{
    verbose = (verbose && Foam::infoDetailLevel > 0);

    if (verbose)
    {
        DetailInfo
            << "I/O    : " << typeName << endl;
    }
}


Foam::fileOperations::uncollatedFileOperation::uncollatedFileOperation
(
    bool verbose
)
:
    fileOperation
    (
        getCommPattern()
    ),
    managedComm_(getManagedComm(comm_))  // Possibly locally allocated
{
    init(verbose);
}


Foam::fileOperations::uncollatedFileOperation::uncollatedFileOperation
(
    const Tuple2<label, labelList>& commAndIORanks,
    const bool distributedRoots,
    bool verbose
)
:
    fileOperation(commAndIORanks, distributedRoots),
    managedComm_(-1)  // Externally managed
{
    init(verbose);
}


void Foam::fileOperations::uncollatedFileOperation::storeComm() const
{
    // From externally -> locally managed
    managedComm_ = getManagedComm(comm_);
}


// * * * * * * * * * * * * * * * * Destructor  * * * * * * * * * * * * * * * //

Foam::fileOperations::uncollatedFileOperation::~uncollatedFileOperation()
{
    // Wait for any outstanding file operations
    flush();

    UPstream::freeCommunicator(managedComm_);
}


// * * * * * * * * * * * * * Filesystem Operations * * * * * * * * * * * * * //

bool Foam::fileOperations::uncollatedFileOperation::mkDir
(
    const fileName& dir,
    mode_t mode
) const
{
    return Foam::mkDir(dir, mode);
}


bool Foam::fileOperations::uncollatedFileOperation::chMod
(
    const fileName& fName,
    mode_t mode
) const
{
    return Foam::chMod(fName, mode);
}


mode_t Foam::fileOperations::uncollatedFileOperation::mode
(
    const fileName& fName,
    const bool followLink
) const
{
    return Foam::mode(fName, followLink);
}


Foam::fileName::Type Foam::fileOperations::uncollatedFileOperation::type
(
    const fileName& fName,
    const bool followLink
) const
{
    return Foam::type(fName, followLink);
}


bool Foam::fileOperations::uncollatedFileOperation::exists
(
    const fileName& fName,
    const bool checkGzip,
    const bool followLink
) const
{
    return Foam::exists(fName, checkGzip, followLink);
}


bool Foam::fileOperations::uncollatedFileOperation::isDir
(
    const fileName& fName,
    const bool followLink
) const
{
    return Foam::isDir(fName, followLink);
}


bool Foam::fileOperations::uncollatedFileOperation::isFile
(
    const fileName& fName,
    const bool checkGzip,
    const bool followLink
) const
{
    return Foam::isFile(fName, checkGzip, followLink);
}


off_t Foam::fileOperations::uncollatedFileOperation::fileSize
(
    const fileName& fName,
    const bool followLink
) const
{
    return Foam::fileSize(fName, followLink);
}


time_t Foam::fileOperations::uncollatedFileOperation::lastModified
(
    const fileName& fName,
    const bool followLink
) const
{
    return Foam::lastModified(fName, followLink);
}


double Foam::fileOperations::uncollatedFileOperation::highResLastModified
(
    const fileName& fName,
    const bool followLink
) const
{
    return Foam::highResLastModified(fName, followLink);
}


bool Foam::fileOperations::uncollatedFileOperation::mvBak
(
    const fileName& fName,
    const std::string& ext
) const
{
    return Foam::mvBak(fName, ext);
}


bool Foam::fileOperations::uncollatedFileOperation::rm
(
    const fileName& fName
) const
{
    return Foam::rm(fName);
}


bool Foam::fileOperations::uncollatedFileOperation::rmDir
(
    const fileName& dir,
    const bool silent,
    const bool emptyOnly
) const
{
    return Foam::rmDir(dir, silent, emptyOnly);
}


Foam::fileNameList Foam::fileOperations::uncollatedFileOperation::readDir
(
    const fileName& dir,
    const fileName::Type type,
    const bool filtergz,
    const bool followLink
) const
{
    return Foam::readDir(dir, type, filtergz, followLink);
}


bool Foam::fileOperations::uncollatedFileOperation::cp
(
    const fileName& src,
    const fileName& dst,
    const bool followLink
) const
{
    return Foam::cp(src, dst, followLink);
}


bool Foam::fileOperations::uncollatedFileOperation::ln
(
    const fileName& src,
    const fileName& dst
) const
{
    return Foam::ln(src, dst);
}


bool Foam::fileOperations::uncollatedFileOperation::mv
(
    const fileName& src,
    const fileName& dst,
    const bool followLink
) const
{
    return Foam::mv(src, dst, followLink);
}


// * * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * //

Foam::fileName Foam::fileOperations::uncollatedFileOperation::filePath
(
    const bool checkGlobal,
    const IOobject& io,
    const word& typeName,
    const bool search
) const
{
    if (debug)
    {
        Pout<< "uncollatedFileOperation::filePath :"
            << " objectPath:" << io.objectPath()
            << " checkGlobal:" << checkGlobal << endl;
    }

    fileName objPath(filePathInfo(checkGlobal, true, io, search));

    if (debug)
    {
        Pout<< "uncollatedFileOperation::filePath :"
            << " Returning from file searching:" << endl
            << "    objectPath:" << io.objectPath() << endl
            << "    filePath  :" << objPath << endl << endl;
    }
    return objPath;
}


Foam::fileName Foam::fileOperations::uncollatedFileOperation::dirPath
(
    const bool checkGlobal,
    const IOobject& io,
    const bool search
) const
{
    if (debug)
    {
        Pout<< "uncollatedFileOperation::dirPath :"
            << " objectPath:" << io.objectPath()
            << " checkGlobal:" << checkGlobal << endl;
    }

    fileName objPath(filePathInfo(checkGlobal, false, io, search));

    if (debug)
    {
        Pout<< "uncollatedFileOperation::dirPath :"
            << " Returning from directory searching:" << endl
            << "    objectPath:" << io.objectPath() << endl
            << "    dirPath   :" << objPath << endl << endl;
    }
    return objPath;
}


Foam::fileNameList Foam::fileOperations::uncollatedFileOperation::readObjects
(
    const objectRegistry& db,
    const fileName& instance,
    const fileName& local,
    word& newInstance
) const
{
    if (debug)
    {
        Pout<< "uncollatedFileOperation::readObjects :"
            << " db:" << db.objectPath()
            << " instance:" << instance << endl;
    }

    //- Use non-time searching version
    fileNameList objectNames
    (
        fileOperation::readObjects(db, instance, local, newInstance)
    );

    if (newInstance.empty())
    {
        // Find similar time
        fileName newInst = db.time().findInstancePath(instant(instance));
        if (!newInst.empty() && newInst != instance)
        {
            // Try with new time
            objectNames = fileOperation::readObjects
            (
                db,
                newInst,
                local,
                newInstance
            );
        }
    }

    if (debug)
    {
        Pout<< "uncollatedFileOperation::readObjects :"
            << " newInstance:" << newInstance
            << " objectNames:" << objectNames << endl;
    }

    return objectNames;
}


bool Foam::fileOperations::uncollatedFileOperation::readHeader
(
    IOobject& io,
    const fileName& fName,
    const word& typeName
) const
{
    if (debug)
    {
        Pout<< "uncollatedFileOperation::readHeader :"
            << " fName:" << fName
            << " typeName:" << typeName << endl;
    }
    if (fName.empty())
    {
        if (IOobject::debug)
        {
            InfoInFunction
                << "file " << io.objectPath() << " could not be opened"
                << endl;
        }

        return false;
    }

    autoPtr<ISstream> isPtr(NewIFstream(fName));

    if (!isPtr || !isPtr->good())
    {
        return false;
    }

    // Regular header or from decomposed data
    bool ok = decomposedBlockData::readHeader(io, *isPtr);

    if (debug)
    {
        Pout<< "uncollatedFileOperation::readHeader :"
            << " for fName:" << fName
            << " ok:" << ok
            << " headerClassName:" << io.headerClassName() << endl;
    }

    return ok;
}


Foam::autoPtr<Foam::ISstream>
Foam::fileOperations::uncollatedFileOperation::readStream
(
    regIOobject& io,
    const fileName& fName,
    const word& typeName,
    const bool readOnProc
) const
{
    if (!readOnProc)
    {
        return autoPtr<ISstream>(new dummyISstream());
    }

    if (fName.empty())
    {
        FatalErrorInFunction
            << "cannot find file " << io.objectPath()
            << exit(FatalError);
    }

    autoPtr<ISstream> isPtr = NewIFstream(fName);

    if (!isPtr || !isPtr->good())
    {
        FatalIOError
        (
            "uncollatedFileOperation::readStream()",
            __FILE__,
            __LINE__,
            fName,
            0
        )   << "cannot open file"
            << exit(FatalIOError);
    }
    else if (!io.readHeader(*isPtr))
    {
        FatalIOErrorInFunction(*isPtr)
            << "problem while reading header for object " << io.name()
            << exit(FatalIOError);
    }

    if (!decomposedBlockData::isCollatedType(io))
    {
        // Short circuit: non-collated format.
        return isPtr;
    }
    else
    {
        // Analyse the objectpath to find out the processor we're trying
        // to access
        label proci = detectProcessorPath(io.objectPath());

        if (proci == -1)
        {
            FatalIOErrorInFunction(*isPtr)
                << "could not detect processor number"
                << " from objectPath:" << io.objectPath()
                << " fName:" << fName
                << exit(FatalIOError);
        }

        // Analyse the fileName for any processor subset. Note: this
        // should really be part of filePath() which should return
        // both file and index in file.
        fileName path, procDir, local;
        procRangeType group;
        label nProcs;
        splitProcessorPath(fName, path, procDir, local, group, nProcs);

        // The local rank (offset)
        if (!group.empty())
        {
            proci = proci - group.start();
        }

        // Read data and return as stream
        return decomposedBlockData::readBlock(proci, *isPtr, io);
    }
}


bool Foam::fileOperations::uncollatedFileOperation::read
(
    regIOobject& io,
    const bool masterOnly,
    const IOstreamOption::streamFormat format,
    const word& typeName
) const
{
    bool ok = false;

    if (!masterOnly || Pstream::master(UPstream::worldComm))
    {
        if (debug)
        {
            Pout<< "uncollatedFileOperation::read :"
                << " Reading object " << io.objectPath()
                << " from file " << endl;
        }

        // Set flag for e.g. codeStream
        const bool oldGlobal = io.globalObject(masterOnly);

        // If codeStream originates from dictionary which is
        // not IOdictionary we have a problem so use global
        const bool oldMasterOnly = regIOobject::masterOnlyReading;
        regIOobject::masterOnlyReading = masterOnly;

        // Read file
        ok = io.readData(io.readStream(typeName));
        io.close();

        // Restore flags
        io.globalObject(oldGlobal);
        regIOobject::masterOnlyReading = oldMasterOnly;

        if (debug)
        {
            Pout<< "uncollatedFileOperation::read :"
                << " Done reading object " << io.objectPath()
                << " from file " << endl;
        }
    }

    if (masterOnly && Pstream::parRun())
    {
        Pstream::broadcasts
        (
            UPstream::worldComm,
            io.headerClassName(),
            io.note()
        );

        if (UPstream::master(UPstream::worldComm))
        {
            OPBstream toAll
            (
                UPstream::masterNo(),
                UPstream::worldComm,
                format
            );
            bool okWrite = io.writeData(toAll);
            ok = ok && okWrite;
        }
        else
        {
            IPBstream fromMaster
            (
                UPstream::masterNo(),
                UPstream::worldComm,
                format
            );
            ok = io.readData(fromMaster);
        }
    }

    return ok;
}


Foam::autoPtr<Foam::ISstream>
Foam::fileOperations::uncollatedFileOperation::NewIFstream
(
    const fileName& filePath
) const
{
    return autoPtr<ISstream>(new IFstream(filePath));
}


Foam::autoPtr<Foam::OSstream>
Foam::fileOperations::uncollatedFileOperation::NewOFstream
(
    const fileName& pathName,
    IOstreamOption streamOpt,
    const bool writeOnProc
) const
{
    return autoPtr<OSstream>(new OFstream(pathName, streamOpt));
}


Foam::autoPtr<Foam::OSstream>
Foam::fileOperations::uncollatedFileOperation::NewOFstream
(
    IOstreamOption::atomicType atomic,
    const fileName& pathName,
    IOstreamOption streamOpt,
    const bool writeOnProc
) const
{
    return autoPtr<OSstream>(new OFstream(atomic, pathName, streamOpt));
}


// ************************************************************************* //